Skip to main content
Ctrl+K

PyFastANI

  • User Guide
  • API Reference
  • GitHub
  • PyPI
  • User Guide
  • API Reference
  • GitHub
  • PyPI

Index

_ | A | C | F | H | I | K | L | M | N | O | P | Q | S | W

_

  • __init__() (pyfastani.Sketch method)

A

  • add_draft() (pyfastani.Sketch method)
  • add_genome() (pyfastani.Sketch method)

C

  • clear() (pyfastani.Sketch method)

F

  • fragment_length (pyfastani.Mapper attribute)
    • (pyfastani.Sketch attribute)
  • fragments (pyfastani.Hit attribute)

H

  • Hit (class in pyfastani)

I

  • identity (pyfastani.Hit attribute)
  • index() (pyfastani.Sketch method)

K

  • k (pyfastani.Mapper attribute)
    • (pyfastani.Sketch attribute)

L

  • lookup_index (pyfastani.Mapper attribute)

M

  • Mapper (class in pyfastani)
  • matches (pyfastani.Hit attribute)
  • MinimizerIndex (class in pyfastani)
  • MinimizerInfo (class in pyfastani)
  • Minimizers (class in pyfastani)
  • minimizers (pyfastani.Mapper attribute)
    • (pyfastani.Sketch attribute)
  • minimum_fraction (pyfastani.Mapper attribute)
    • (pyfastani.Sketch attribute)

N

  • name (pyfastani.Hit attribute)
  • names (pyfastani.Sketch attribute)

O

  • occurences_threshold (pyfastani.Sketch attribute)

P

  • p_value (pyfastani.Mapper attribute)
    • (pyfastani.Sketch attribute)
  • percentage_identity (pyfastani.Mapper attribute)
    • (pyfastani.Sketch attribute)
  • Position (class in pyfastani)
  • protein (pyfastani.Mapper attribute)
    • (pyfastani.Sketch attribute)

Q

  • query_draft() (pyfastani.Mapper method)
  • query_genome() (pyfastani.Mapper method)

S

  • Sketch (class in pyfastani)

W

  • window_size (pyfastani.Mapper attribute)
    • (pyfastani.Sketch attribute)

© Copyright 2021-2026, Martin Larralde.

Created using Sphinx 9.0.4.

Built with the PyData Sphinx Theme 0.16.1.