API Reference

Average Nucleotide Identity

pyfastani.Sketch

An index computing minimizers over the reference genomes.

pyfastani.Mapper

A genome mapper using Murmur3 hashes and k-mers to compute ANI.

Minimizers

pyfastani.Minimizers

A read-only view over the minimizers of a Sketch or a Mapper.

pyfastani.MinimizerInfo

The information about a single minimizer.

pyfastani.MinimizerIndex

The index mapping minimizer hash values to their positions.

Miscellaneous

pyfastani.Hit

A single hit found when querying a Mapper with a genome.

pyfastani.Position