Miscellaneous

Hit

class pyfastani.Hit

A single hit found when querying a Mapper with a genome.

name

The name of the genome that produced a hit, as given to Sketch.add_genome or Sketch.add_draft.

Type:

object

matches

The number of fragments that matched the target genome.

Type:

int

fragments

The total number of fragments used to compare the query and target genomes.

Type:

int

identity

The average nucleotide identity between the two genomes, given as a percentage.

Type:

float

Position

class pyfastani.Position